GENETIC DIVERSITY OF IRAQI LOCAL COWS AND THEIR COMPARISON WITH IMPORTED COWS USING MICROSATELLITE MARKERS

Authors

  • S. M. Al-Jub
  • Riyadh Hamad senkal

DOI:

https://doi.org/10.36103/ijas.v54i6.1852

Abstract

This study was conducted to identify the genetic diversity of microsatellite markers CSSM66, ETH10 and ILSTS34 using 100 cows of several breeds distributed as follows: 30 local Iraqi cows (equally divided into Restaki, Janoubi and Sharabi) as well as  50 Holstein cows (German) and 20 Brahman bulls after amplification in PCR reaction, 16 alleles of ETH10, CSSM66 and ILSTS34 markers were detected in a sample of studied cattle and they were 7, 6 and 5 alleles, respectively. The total Shannon (I) was 1.5400, and it was found that the average value of Obs_Hom is smaller than the average value of Exp_Het, being 0.2600 and 0.7544, respectively. This indicates the presence of high genetic heterogeneity or diversity among cows. The average values ​​of FIS, FIT and FST and genetic migration Nm -0.6257, -0.0162, 0.3749 and 0.4168, respectively. These results showed through the UPGMA tree a common ancestry between domestic cattle and Brahman.

References

Ali, E. H. 2016. Measurring cow farms efficiency by using the quality response. Iraqi Journal of Agricultural Sciences, 47(2),600-611. https://doi.org/10.36103/ijas.v47i2.606

Alkudsi, N. H., and A.W., Shaker, .2017. The relationship of lactoferrin gene with milk production and its component in holstein cow. Iraqi Journal of Agricultural Sciences, 48(1):375-381. https://doi.org/10.36103/ijas.v48i1.457

AlKudsi, N.H. A.A., Hassan, and J.F., Iliya,. 2012. Cattle Production. University Press

Alshawi, A., A., Essa, S., Al-Bayatti, and O. Hanotte, .2019. Genome analysis reveals genetic admixture and signature of selection for productivity and environmental traits in Iraqi cattle. Frontiers in genetics, 10, 609

Abdulkareem, T. A. and A. J. A. Al-Saedi 2022. Comparison of semen quality for three lines of holstein bulls: 1. some immediate and microscopic characteristics. Iraqi Journal of Agricultural Sciences, 53(4),752-759. https://doi.org/10.36103/ijas.v53i4.1585

Abdulkareem, T. A., S. M. Eidanm F. K. Al-Saidy and N. K. Al-Hassani. 2023. Effect of pre- and post-mating vitamins ad3e treatment on reproductive performance of awassi ewes. Iraqi Journal of Agricultural Sciences, 54(2),431-437. https://doi.org/10.36103/ijas.v54i2.1717

Baghdsar .G.A .1980. Genetic Analysis of Some Physiological Characters and Milk Production and Coefficient of Heat Tolerance Parameters in Dairy Cows. M.Sc.Thesis College of Agriculture. University of Baghdad.pp: 25

Barcaccia, G., M., Felicetti, G., Galla, S., Capomaccio,K,. Cappelli, E,.Albertini, and A.V. Supplizi, .2013. Molecular analysis of genetic diversity, population structure and inbreeding level of the Italian Lipizzan Horse. Livestock Science, 151(2-3), 124-133

Barendse, W.,D., Vaiman, S.J., Kemp, Y., Sugimoto, S.M., Armitage, J. L., Williams, and,P. Zaragoza,. 1997. A medium-density genetic linkage map of the bovine genome. Mammalian Genome, 8(1): 21-28

Brezinsky, L.; S.J., Kemp, and A.J.; Teale, 1993. Ilsts005—A polymorphic bovine microsatellite. anim. genet, 24, (73),114-124. [CrossRef].

Chaudhari, M. V.,S.N.S., Parmar, C. G., Joshi, C. D., Bhong, S., Fatima,M. S., Thakur, and S.S.,Thakur,. 2009. Molecular characterization of Kenkatha and Gaolao (Bos indicus) cattle breeds using microsatellite markers. Animal Biodiversity and Conservation, 32(2), 71-76

Eggen A.,D,. Steinbach, R., Fries, and,H,. Leveziel. 1994. Mapping the Bovine Genome: Current Status. In XXIV International Conference on Animal Genetics. International Society for Animal Genetics.pp : 35‏

Eidan, S. M. and S. A. Khudhir. 2023. Association between atp1a1 gene polymorphisms with semen characteristics in holstein bulls. Iraqi Journal of Agricultural Sciences, 54(2),330-337. https://doi.org/10.36103/ijas.v54i2.1706

El Mousadik, A., and R,J., Petit, . 1996. High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco. Theoretical and Applied genetics, 92(7), 832-839

Farber, C. R., and J. F. Medrano. 2003. Putative in silico mapping of dna sequences to livestock genome maps using SSLP Flanking Sequences. Anim. Genet. 34:11–18

Frankham, R.,S.E.J.D.,D.A., Ballou, Briscoe, and J.D., Ballou. 2002. Introduction to Conservation Genetics. Cambridge University press.‏ Cambridge

Gizaw, S. J.A., Van Arendonk, H., Komen, J.J., Windig, and O., Hanotte, .2007. Population structure, genetic variation and morphological diversity in indigenous sheep of Ethiopia. Animal Genetics, 38(6), 621-628

Gorman, G. C., and Jr.J., Renzi .1979. Genetic Distance and Heterozygosity Estimates in Electrophoretic Studies: Effects of Sample Size. Copeia,pp: 242-249

Hassan, M.S., S.M. Eidan, F.F. Ibrahim, and K.J. Yahya. 2021. Effect of swim-up and glass wool techniques, with adding antioxidants to tris extender on improving postcryopreserved total sperm characteristics in straw and freezability percentage for low semen quality of Holstein bulls. Iraqi Journal of Agricultural Science, 52(4), 885-895. https://doi.org/10.36103/ijas.v52i4.1396

Hassan, M.S. and S.M. Eidan. 2021. Effect of swim-up and glass wool techniques, with adding antioxidants to tris extender on improving post-cryopreserved some semen attributes of low semen quality for Holstein bulls. Iraqi Journal of Agricultural Science, 52(3), 552-563. https://doi.org/10.36103/ijas.v52i3.1342

ISAG/FAO.2004.Standing Committee. Secondary guidelines for development of national farm animal genetic resources management plans. Measurement of domestic animal diversity (MoDAD): Recommended Microsatellite markers. https://www.fao.org/3/aq569e/aq569e.pdf

‏Kemp S.J.,O., Hishida .J., Wambugu, A., Rink M.L., Longeri, R.Z., Ma ,Y., Da, H.A., Lewin, W., Barendse ,and A.J., Teale . 1995. A panel of polymorphic bovine, ovine and caprine microsatellite markers. Animal Genetics 26, 299–306

Ministry Of Agriculture . 2018. Local farm animals in Iraq. Directorate of animal Resources Genetic sources Department .42(2),110-120

Ministry Of Agriculture .2008. The National Survey of Livestock in Iraq, Department of Planning and Follow-up | Department of.30(2) ,80-90

Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70, 3321–3323

Oldenbroek, J. K. (Ed.). 2017. Genomic Management of Animal Genetic Diversity. Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-297-9

Paetkau, D.,W., Calvert, I., Stirling, and C. Strobeck, . 1995. Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4(3), 347-354

Peixoto, M. G. C., M.R.S.,Carvalho, A.A., Egito, R. S., Steinberg, F.A.T., Bruneli, M. Â., Machado, and P.A.S., Fonseca, .2021. Genetic diversity and population genetic structure of a guzerá (Bos indicus) Meta-Population. Animals, 11(4), 1125

Putman, A. I., and, I , Carbone, .2014. Challenges in analysis and interpretation of microsatellite data for population genetic studies. Ecology and Evolution, 4(22), 4399-4428

Radhika, G.,T.V., Aravindakshan, and S., Thomas,. 2021. Estimation of genetic diversity in domestic animals using microsatellites. J Pharm Innov SP, 10(5S): 677-683

Raoof, S. O. 2018. Most porbable producing ability (mppa) of daily milk production for local cows. Iraqi Journal of Agricultural Sciences, 49(3).‏394-399. https://doi.org/10.36103/ijas.v49i3.110

Sharma, H.,R. Sharma, S.,KN,R., Ahlawat, A., Jain, and M.S. Tantia,. 2020. Genetic diversity status of only registered cattle breed of Chhattisgarh–Kosali. Indian Journal of Animal Sciences, 90(6), 873-878

Sneath, P. H., and R.R., Sokal, 1973. Numerical Taxonomy. The principles and practice of numerical classification. Classification’, W. H. Freeman, San Francisco, CA.

Svishcheva, G. O., Babayan, B., Lkhasaranov, A., Tsendsuren, A., Abdurasulov, and Y., Stolpovsky,. 2020. Microsatellite diversity and phylogenetic relationships among East Eurasian Bos taurus breeds with an emphasis on rare and ancient local cattle. Animals, 10(9), 1493

Tang, C. 2006. Analysis of Genetic Diversity of Microsatellite Among 13 Sheep Population in Xinjiang [D]. M.Sc. Thesis of Xinjiang Agric. Univ.‏pp : 20

Teneva, A.,E., Todorovska, M.P., Petrović, S., Kusza, S., Perriassamy, K., V., Caro Petrović, and D., Gadjev, . 2018. Short tandem repeats (STR) in cattle genomics and breeding. Biotechnology in Animal Husbandry, 34(2), 127-147

Toldo, S. S., R., Fries, P., Steffen, H.L., Neibergs, W., Barendse, J.E., Womack, D.J., Hetzel, and G., Stranzinger, 1993. Physically Mapped, Cosmid-Derived Microsatellite Markers as Anchor loci on Bovine Chromosomes. Mamm. Genome 4, 720–727.

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Published

2023-12-29

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How to Cite

S. M. Al-Jub, & Riyadh Hamad senkal. (2023). GENETIC DIVERSITY OF IRAQI LOCAL COWS AND THEIR COMPARISON WITH IMPORTED COWS USING MICROSATELLITE MARKERS. IRAQI JOURNAL OF AGRICULTURAL SCIENCES, 54(6), 1529-1537. https://doi.org/10.36103/ijas.v54i6.1852

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